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Directives

After the header lines, AOMX expects directives, each consisting of a directive name (which is always composed of three capital letters) followed by data, further keywords or the names of user defined variables. Directives may have line structure or block structure; it is important that those having block structure must be terminated by a blank line. The following directives are known to AOMX:

Normally, the sequence of directives is not important. But there are exceptions that are coherent with the fact that AOMX scans the input file only once and, while doing so, immediately evaluates the directives it encounters:

  1. No variable may be used prior to its definition.
  2. The CON directive which denotes ligand connectivity may occur only if coordinates and AOM parameters are already defined.
  3. Some of the options of the CTL directive have different effects in calculations with and without optimization. Therefore, CTL should not occur before VAR.





Heribert Adamsky
Sat Sep 14 16:23:16 MET DST 1996